Code and Datasets

Code

https://github.com/vvoelz/voelzlab – Voelz Lab code repository (private)

https://github.com/vvoelz/biceps – Bayesian inference of conformational populations (BICePs), an method to infer populations from a combination of computational models and sparse experimental observables.

https://github.com/vvoelz/hpsandbox – simple (and slow) python library for experimenting with the two-dimensional HP lattice model of proteins.   

https://github.com/vvoelz/ratespec – python code for calculating rate spectra (inverse Laplace transforms with Bayesian regularization) from noisy time course data

Datasets

Folding@home COVID-19 protein simulation data as an AWS Open Data Set: https://registry.opendata.aws/foldingathome-covid19