

{"id":26,"date":"2023-08-03T11:37:32","date_gmt":"2023-08-03T15:37:32","guid":{"rendered":"https:\/\/sites.temple.edu\/hamedhaghshenas\/?page_id=26"},"modified":"2025-12-22T03:49:23","modified_gmt":"2025-12-22T08:49:23","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.temple.edu\/hamedhaghshenas\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<p><\/p>\n\n\n\n<p><em><strong>Hamed Haghshenas<\/strong><\/em>, Mauricio Arias, Aleesha George, Andrew J. Musser, Felipe Herrera, and Frank C. Spano. &#8220;Modeling the P3HT microcavity reflectance spectrum: Introducing a partitioning scheme for treating large disordered chromophore ensembles.&#8221; <em><strong>The Journal of Chemical Physics<\/strong><\/em> 163, no. 16 (2025).<\/p>\n\n\n\n<p><a style=\"text-decoration: none;color: inherit\" href=\"https:\/\/pubs.acs.org\/doi\/full\/10.1021\/acs.jpcc.4c07982\" target=\"_blank\" rel=\"noreferrer noopener\"><strong><em>Hamed Haghshenas<\/em><\/strong>, April Bialas, and Frank C. Spano. &#8220;Nonlocal Coupling Drives Excimer Formation in Molecular Dimers: The Case for J-Aggregate Excimers.&#8221; <em><strong>The Journal of Physical Chemistry C<\/strong><\/em>, (2025).<\/a><\/p>\n\n\n\n<p><a style=\"text-decoration: none;color: inherit\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2352214325000450\" data-type=\"link\" data-id=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2352214325000450\" target=\"_blank\" rel=\"noreferrer noopener\">Hossein Tavakol, and  <strong><em>Hamed Haghshenas<\/em><\/strong>. &#8220;Comparative DFT, NBO, and AIM studies on the sensing and adsorption abilities of simple and doped graphene nanosheets for phosphine gas.&#8221; <strong><em>Computational Condensed Matter<\/em><\/strong>, (2025).<\/a><\/p>\n\n\n\n<p><a style=\"text-decoration: none;color: inherit\" href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jctc.4c00299\" target=\"_blank\" rel=\"noreferrer noopener\"><strong><em>Hamed Haghshenas<\/em><\/strong>, and Frank C. Spano.&#8221;Impact of Local and Nonlocal Vibronic Coupling on the Absorption and Emission Spectra of J- and H-Dimers.&#8221; <em><strong>Journal of chemical theory and computation<\/strong><\/em>, (2024).<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/full\/10.1002\/bkcs.12843\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\">Bita Kaviani, Marzieh Ghani Dehkordi, and <strong><em>Hamed Haghshenas<\/em><\/strong>. &#8220;Computational basis of TEAD\u20103 protein noncovalent inhibition: 3D\u2010QSAR modeling and molecular dynamics simulation.&#8221; <em><strong>Bulletin of the Korean Chemical Society<\/strong><\/em>, (2024).<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/www.tandfonline.com\/doi\/abs\/10.1080\/08927022.2022.2125511\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\">Bita Kaviani, Mojtaba Asad Samani, <strong><em>Hamed Haghshenas<\/em><\/strong>, and Marzieh Ghani Dehkordi. &#8220;Development of pyrrolidine and isoindoline derivatives as new DPP8 inhibitors using a combination of 3D-QSAR technique, pharmacophore modeling, docking studies, and molecular dynamics simulations.&#8221; <em><strong>Molecular Simulation<\/strong><\/em> 49, no. 1 (2023): 85-98.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/www.mdpi.com\/2624-960X\/3\/3\/23\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\">Hossein Tavakol, and <strong><em>Hamed Haghshenas<\/em><\/strong>. &#8220;A DFT study on the interaction of doped carbon nanotubes with H2S, SO2 and thiophene.&#8221; <em><strong>Quantum Reports<\/strong><\/em> 3, no. 3 (2021): 366-375.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/full\/10.1002\/jcc.26514\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\"><strong><em>Hamed Haghshenas<\/em><\/strong>, Bita Kaviani, Monireh Firouzeh, and Hossein Tavakol. &#8220;Developing a variation of 3D\u2010QSAR\/MD method in drug design.&#8221; <em><strong>Journal of Computational Chemistry<\/strong><\/em> 42, no. 13 (2021): 917-929.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/pubs.acs.org\/doi\/full\/10.1021\/acs.jpcb.9b10739\" data-type=\"link\" data-id=\"https:\/\/pubs.acs.org\/doi\/full\/10.1021\/acs.jpcb.9b10739\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\"><strong><em>Hamed Haghshenas<\/em><\/strong>, Hossein Tavakol, Bita Kaviani, and Gholamhossein Mohammadnezhad. &#8220;AMBER Force Field Parameters for Cobalt-Containing Biological Systems: A Systematic Derivation Study.&#8221; <strong><em>The Journal of Physical Chemistry B<\/em> <\/strong>124, no. 5 (2020): 777-787.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/link.springer.com\/article\/10.1007\/s13738-016-0932-9\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\">Fariba Dehghanian, <strong><em>Hamed Haghshenas<\/em><\/strong>, Maryam Kay, and Hossein Tavakol. &#8220;A molecular dynamics investigation on the interaction properties of AzrC and its cofactor.&#8221; <em><strong>Journal of the Iranian Chemical Society<\/strong><\/em> 13 (2016): 2143-2153.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/www.tandfonline.com\/doi\/full\/10.1080\/07391102.2015.1039585\" target=\"_blank\" rel=\"noreferrer noopener\" style=\"text-decoration: none;color: inherit\"><strong><em>Hamed Haghshenas<\/em><\/strong>, Maryam Kay, Fariba Dehghanian, and Hossein Tavakol. &#8220;Molecular dynamics study of biodegradation of azo dyes via their interactions with AzrC azoreductase.&#8221; <em><strong>Journal of Biomolecular Structure and Dynamics<\/strong><\/em> 34, no. 3 (2016): 453-462.<\/a><\/p>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Conferences<\/h2>\n\n\n\n<p>Hajar Taheri, Karim Mahnam, Azade Hoghoughi, and <strong><em>Hamed Haghshenas<\/em><\/strong>. &#8220;Investigation of pH effect on \u03b11-antitrypsin structure via molecular dynamics simulation.&#8221; <em><strong>1st Tabriz International Life Science Conference and 12th Iran Biophysical Chemistry Conference<\/strong><\/em>, (2013).<\/p>\n\n\n\n<p><strong><em>Hamed Haghshenas<\/em><\/strong> and Karim Mahnam. &#8220;Theoretical analysis of some novel Derivatives of Sandimmun to its receptor in order to design a novel drug by molecular docking.&#8221; <strong><em>Iranian Conference On Bioinformatics<\/em><\/strong> 4 (2012).<\/p>\n\n\n\n<p>Azade Hoghoughi, Karim Mahnam, Hajar Taheri, and <strong><em>Hamed Haghshenas<\/em><\/strong>. &#8220;Studies of Docking Cladribine, Fingolimod and mutated types to promoter of P53.&#8221; <strong><em>Iranian Conference On Bioinformatics<\/em><\/strong> 4, (2012).<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Selected Awards:<\/h2>\n\n\n\n<p><strong>Francis H. Case Award for Outstanding Research<\/strong>, Department of Chemistry, College of Science and Technology, Temple University (<strong>2025<\/strong>)<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Hamed Haghshenas, Mauricio Arias, Aleesha George, Andrew J. Musser, Felipe Herrera, and Frank C. Spano. &#8220;Modeling the P3HT microcavity reflectance spectrum: Introducing a partitioning scheme for treating large disordered chromophore ensembles.&#8221; The Journal of Chemical Physics 163, no. 16 (2025). Hamed Haghshenas, April Bialas, and Frank C. Spano. &#8220;Nonlocal Coupling Drives Excimer Formation in Molecular&hellip;&nbsp;<a href=\"https:\/\/sites.temple.edu\/hamedhaghshenas\/publications\/\" rel=\"bookmark\">Read More &raquo;<span class=\"screen-reader-text\">Publications<\/span><\/a><\/p>\n","protected":false},"author":35749,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"neve_meta_sidebar":"","neve_meta_container":"","neve_meta_enable_content_width":"","neve_meta_content_width":0,"neve_meta_title_alignment":"","neve_meta_author_avatar":"","neve_post_elements_order":"","neve_meta_disable_header":"","neve_meta_disable_footer":"","neve_meta_disable_title":"","footnotes":""},"class_list":["post-26","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/pages\/26","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/users\/35749"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/comments?post=26"}],"version-history":[{"count":23,"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/pages\/26\/revisions"}],"predecessor-version":[{"id":196,"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/pages\/26\/revisions\/196"}],"wp:attachment":[{"href":"https:\/\/sites.temple.edu\/hamedhaghshenas\/wp-json\/wp\/v2\/media?parent=26"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}